[INFO] fetching crate bio-seq 0.11.2...
[INFO] checking bio-seq-0.11.2 against master#158f00a1c5175648af6f6099b075f78d1d014a28 for pr-121251
[INFO] extracting crate bio-seq 0.11.2 into /workspace/builds/worker-7-tc1/source
[INFO] validating manifest of crates.io crate bio-seq 0.11.2 on toolchain 158f00a1c5175648af6f6099b075f78d1d014a28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-seq 0.11.2
[INFO] finished tweaking crates.io crate bio-seq 0.11.2
[INFO] tweaked toml for crates.io crate bio-seq 0.11.2 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-seq-derive v1.6.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1e42d9fe12c1871b505e72c3d592b0fc8f29846f4fdcf1996e10e058d0b9f175
[INFO] running `Command { std: "docker" "start" "-a" "1e42d9fe12c1871b505e72c3d592b0fc8f29846f4fdcf1996e10e058d0b9f175", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1e42d9fe12c1871b505e72c3d592b0fc8f29846f4fdcf1996e10e058d0b9f175", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1e42d9fe12c1871b505e72c3d592b0fc8f29846f4fdcf1996e10e058d0b9f175", kill_on_drop: false }`
[INFO] [stdout] 1e42d9fe12c1871b505e72c3d592b0fc8f29846f4fdcf1996e10e058d0b9f175
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+158f00a1c5175648af6f6099b075f78d1d014a28" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a4a21f7acc8a1e9bc6d26c930410efdd3f2286479bfd2aac1d315e84a99c6a14
[INFO] running `Command { std: "docker" "start" "-a" "a4a21f7acc8a1e9bc6d26c930410efdd3f2286479bfd2aac1d315e84a99c6a14", kill_on_drop: false }`
[INFO] [stderr]    Compiling radium v0.7.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking tap v1.0.1
[INFO] [stderr]     Checking funty v2.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.78
[INFO] [stderr]     Checking wyz v0.5.1
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]     Checking bitvec v1.0.1
[INFO] [stderr]    Compiling bio-seq-derive v1.6.4
[INFO] [stderr]     Checking bio-seq v0.11.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variants `AmbiguousCodon` and `InvalidCodon` are never constructed
[INFO] [stdout]   --> src/translation/mod.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | enum TranslationError {
[INFO] [stdout]    |      ---------------- variants in this enum
[INFO] [stdout] 21 |     AmbiguousCodon,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 22 |     InvalidCodon,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `TranslationError` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `TranslationTable` is never used
[INFO] [stdout]   --> src/translation/mod.rs:26:7
[INFO] [stdout]    |
[INFO] [stdout] 26 | trait TranslationTable<A: Codec, B: Codec> {
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `PartialTranslationTable` is never used
[INFO] [stdout]   --> src/translation/mod.rs:32:7
[INFO] [stdout]    |
[INFO] [stdout] 32 | trait PartialTranslationTable<A: Codec, B: Codec> {
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `table` and `inverse_table` are never read
[INFO] [stdout]   --> src/translation/mod.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 38 | pub struct CodonTable<A: Codec, B: Codec> {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] 39 |     table: HashMap<Seq<A>, B>,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 40 |     inverse_table: HashMap<B, Option<Seq<A>>>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `AMINO_TO_IUPAC` is never used
[INFO] [stdout]   --> src/translation/standard.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 | static AMINO_TO_IUPAC: OnceCell<HashMap<Amino, Option<Seq<Iupac>>>> = OnceCell::new();
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: static `IUPAC_TO_AMINO` is never used
[INFO] [stdout]   --> src/translation/standard.rs:17:8
[INFO] [stdout]    |
[INFO] [stdout] 17 | static IUPAC_TO_AMINO: OnceCell<[(Seq<Iupac>, Amino); 29]> = OnceCell::new();
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `initialise_iupac_to_amino` is never used
[INFO] [stdout]   --> src/translation/standard.rs:19:4
[INFO] [stdout]    |
[INFO] [stdout] 19 | fn initialise_iupac_to_amino() -> [(Seq<Iupac>, Amino); 29] {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `initialise_amino_to_iupac` is never used
[INFO] [stdout]   --> src/translation/standard.rs:53:4
[INFO] [stdout]    |
[INFO] [stdout] 53 | fn initialise_amino_to_iupac() -> HashMap<Amino, Option<Seq<Iupac>>> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 8 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `to_codon` is never used
[INFO] [stdout]   --> src/translation/mod.rs:28:8
[INFO] [stdout]    |
[INFO] [stdout] 26 | trait TranslationTable<A: Codec, B: Codec> {
[INFO] [stdout]    |       ---------------- method in this trait
[INFO] [stdout] 27 |     fn to_amino(&self, codon: &SeqSlice<A>) -> B;
[INFO] [stdout] 28 |     fn to_codon(&self, amino: B) -> Result<Seq<A>, TranslationError>;
[INFO] [stdout]    |        ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.06s
[INFO] running `Command { std: "docker" "inspect" "a4a21f7acc8a1e9bc6d26c930410efdd3f2286479bfd2aac1d315e84a99c6a14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a4a21f7acc8a1e9bc6d26c930410efdd3f2286479bfd2aac1d315e84a99c6a14", kill_on_drop: false }`
[INFO] [stdout] a4a21f7acc8a1e9bc6d26c930410efdd3f2286479bfd2aac1d315e84a99c6a14
